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Support FastSAM directory inference and plot (#4634)

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Glenn Jocher <glenn.jocher@ultralytics.com>
pull/4660/head
Gezhi Zhang 1 year ago committed by GitHub
parent 620335de27
commit 8596ee241f
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2 changed files with 144 additions and 128 deletions
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  1. 2
      ultralytics/models/fastsam/predict.py
  2. 270
      ultralytics/models/fastsam/prompt.py

2
ultralytics/models/fastsam/predict.py
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@ -22,7 +22,7 @@ class FastSAMPredictor(DetectionPredictor):
max_det=self.args.max_det,
nc=len(self.model.names),
classes=self.args.classes)
full_box = torch.zeros_like(p[0][0])
full_box = torch.zeros(p[0].shape[1])
full_box[2], full_box[3], full_box[4], full_box[6:] = img.shape[3], img.shape[2], 1.0, 1.0
full_box = full_box.view(1, -1)
critical_iou_index = bbox_iou(full_box[0][:4], p[0][:, :4], iou_thres=0.9, image_shape=img.shape[2:])

270
ultralytics/models/fastsam/prompt.py
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@ -8,18 +8,17 @@ import matplotlib.pyplot as plt
import numpy as np
import torch
from PIL import Image
from tqdm import tqdm
from ultralytics.utils import LOGGER
from ultralytics.utils import TQDM_BAR_FORMAT
class FastSAMPrompt:
def __init__(self, img_path, results, device='cuda') -> None:
# self.img_path = img_path
def __init__(self, source, results, device='cuda') -> None:
self.device = device
self.results = results
self.img_path = str(img_path)
self.ori_img = cv2.imread(self.img_path)
self.source = source
# Import and assign clip
try:
@ -48,7 +47,7 @@ class FastSAMPrompt:
@staticmethod
def _format_results(result, filter=0):
annotations = []
n = len(result.masks.data)
n = len(result.masks.data) if result.masks is not None else 0
for i in range(n):
mask = result.masks.data[i] == 1.0
if torch.sum(mask) >= filter:
@ -86,69 +85,79 @@ class FastSAMPrompt:
mask_random_color=True,
better_quality=True,
retina=False,
with_countouers=True):
if isinstance(annotations[0], dict):
annotations = [annotation['segmentation'] for annotation in annotations]
if isinstance(annotations, torch.Tensor):
annotations = annotations.cpu().numpy()
result_name = os.path.basename(self.img_path)
image = self.ori_img
image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
original_h = image.shape[0]
original_w = image.shape[1]
# for macOS only
# plt.switch_backend('TkAgg')
fig = plt.figure(figsize=(original_w / 100, original_h / 100))
# Add subplot with no margin.
plt.subplots_adjust(top=1, bottom=0, right=1, left=0, hspace=0, wspace=0)
plt.margins(0, 0)
plt.gca().xaxis.set_major_locator(plt.NullLocator())
plt.gca().yaxis.set_major_locator(plt.NullLocator())
plt.imshow(image)
if better_quality:
for i, mask in enumerate(annotations):
mask = cv2.morphologyEx(mask.astype(np.uint8), cv2.MORPH_CLOSE, np.ones((3, 3), np.uint8))
annotations[i] = cv2.morphologyEx(mask.astype(np.uint8), cv2.MORPH_OPEN, np.ones((8, 8), np.uint8))
self.fast_show_mask(
annotations,
plt.gca(),
random_color=mask_random_color,
bbox=bbox,
points=points,
pointlabel=point_label,
retinamask=retina,
target_height=original_h,
target_width=original_w,
)
if with_countouers:
contour_all = []
temp = np.zeros((original_h, original_w, 1))
for i, mask in enumerate(annotations):
if isinstance(mask, dict):
mask = mask['segmentation']
annotation = mask.astype(np.uint8)
if not retina:
annotation = cv2.resize(
annotation,
(original_w, original_h),
interpolation=cv2.INTER_NEAREST,
)
contours, hierarchy = cv2.findContours(annotation, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE)
contour_all.extend(iter(contours))
cv2.drawContours(temp, contour_all, -1, (255, 255, 255), 2)
color = np.array([0 / 255, 0 / 255, 1.0, 0.8])
contour_mask = temp / 255 * color.reshape(1, 1, -1)
plt.imshow(contour_mask)
save_path = Path(output) / result_name
save_path.parent.mkdir(exist_ok=True, parents=True)
plt.axis('off')
fig.savefig(save_path)
LOGGER.info(f'Saved to {save_path.absolute()}')
# CPU post process
withContours=True):
n = len(annotations)
pbar = tqdm(annotations, total=n, bar_format=TQDM_BAR_FORMAT)
for ann in pbar:
result_name = os.path.basename(ann.path)
image = ann.orig_img
original_h, original_w = ann.orig_shape
# for macOS only
# plt.switch_backend('TkAgg')
plt.figure(figsize=(original_w / 100, original_h / 100))
# Add subplot with no margin.
plt.subplots_adjust(top=1, bottom=0, right=1, left=0, hspace=0, wspace=0)
plt.margins(0, 0)
plt.gca().xaxis.set_major_locator(plt.NullLocator())
plt.gca().yaxis.set_major_locator(plt.NullLocator())
plt.imshow(image)
if ann.masks is not None:
masks = ann.masks.data
if better_quality:
if isinstance(masks[0], torch.Tensor):
masks = np.array(masks.cpu())
for i, mask in enumerate(masks):
mask = cv2.morphologyEx(mask.astype(np.uint8), cv2.MORPH_CLOSE, np.ones((3, 3), np.uint8))
masks[i] = cv2.morphologyEx(mask.astype(np.uint8), cv2.MORPH_OPEN, np.ones((8, 8), np.uint8))
self.fast_show_mask(
masks,
plt.gca(),
random_color=mask_random_color,
bbox=bbox,
points=points,
pointlabel=point_label,
retinamask=retina,
target_height=original_h,
target_width=original_w,
)
if withContours:
contour_all = []
temp = np.zeros((original_h, original_w, 1))
for i, mask in enumerate(masks):
mask = mask.astype(np.uint8)
if not retina:
mask = cv2.resize(
mask,
(original_w, original_h),
interpolation=cv2.INTER_NEAREST,
)
contours, _ = cv2.findContours(mask, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE)
contour_all.extend(iter(contours))
cv2.drawContours(temp, contour_all, -1, (255, 255, 255), 2)
color = np.array([0 / 255, 0 / 255, 1.0, 0.8])
contour_mask = temp / 255 * color.reshape(1, 1, -1)
plt.imshow(contour_mask)
plt.axis('off')
fig = plt.gcf()
try:
buf = fig.canvas.tostring_rgb()
except AttributeError:
fig.canvas.draw()
buf = fig.canvas.tostring_rgb()
cols, rows = fig.canvas.get_width_height()
img_array = np.frombuffer(buf, dtype=np.uint8).reshape(rows, cols, 3)
save_path = Path(output) / result_name
save_path.parent.mkdir(exist_ok=True, parents=True)
cv2.imwrite(str(save_path), img_array)
plt.close()
pbar.set_description('Saving {} to {}'.format(result_name, save_path))
@staticmethod
def fast_show_mask(
annotation,
@ -215,8 +224,9 @@ class FastSAMPrompt:
return probs[:, 0].softmax(dim=0)
def _crop_image(self, format_results):
image = Image.fromarray(cv2.cvtColor(self.ori_img, cv2.COLOR_BGR2RGB))
if os.path.isdir(self.source):
raise ValueError(f"'{self.source}' is a directory, not a valid source for this function.")
image = Image.fromarray(cv2.cvtColor(self.results[0].orig_img, cv2.COLOR_BGR2RGB))
ori_w, ori_h = image.size
annotations = format_results
mask_h, mask_w = annotations[0]['segmentation'].shape
@ -237,65 +247,71 @@ class FastSAMPrompt:
return cropped_boxes, cropped_images, not_crop, filter_id, annotations
def box_prompt(self, bbox):
assert (bbox[2] != 0 and bbox[3] != 0)
masks = self.results[0].masks.data
target_height = self.ori_img.shape[0]
target_width = self.ori_img.shape[1]
h = masks.shape[1]
w = masks.shape[2]
if h != target_height or w != target_width:
bbox = [
int(bbox[0] * w / target_width),
int(bbox[1] * h / target_height),
int(bbox[2] * w / target_width),
int(bbox[3] * h / target_height), ]
bbox[0] = max(round(bbox[0]), 0)
bbox[1] = max(round(bbox[1]), 0)
bbox[2] = min(round(bbox[2]), w)
bbox[3] = min(round(bbox[3]), h)
# IoUs = torch.zeros(len(masks), dtype=torch.float32)
bbox_area = (bbox[3] - bbox[1]) * (bbox[2] - bbox[0])
masks_area = torch.sum(masks[:, bbox[1]:bbox[3], bbox[0]:bbox[2]], dim=(1, 2))
orig_masks_area = torch.sum(masks, dim=(1, 2))
union = bbox_area + orig_masks_area - masks_area
IoUs = masks_area / union
max_iou_index = torch.argmax(IoUs)
return np.array([masks[max_iou_index].cpu().numpy()])
if self.results[0].masks is not None:
assert (bbox[2] != 0 and bbox[3] != 0)
if os.path.isdir(self.source):
raise ValueError(f"'{self.source}' is a directory, not a valid source for this function.")
masks = self.results[0].masks.data
target_height, target_width = self.results[0].orig_shape
h = masks.shape[1]
w = masks.shape[2]
if h != target_height or w != target_width:
bbox = [
int(bbox[0] * w / target_width),
int(bbox[1] * h / target_height),
int(bbox[2] * w / target_width),
int(bbox[3] * h / target_height), ]
bbox[0] = max(round(bbox[0]), 0)
bbox[1] = max(round(bbox[1]), 0)
bbox[2] = min(round(bbox[2]), w)
bbox[3] = min(round(bbox[3]), h)
# IoUs = torch.zeros(len(masks), dtype=torch.float32)
bbox_area = (bbox[3] - bbox[1]) * (bbox[2] - bbox[0])
masks_area = torch.sum(masks[:, bbox[1]:bbox[3], bbox[0]:bbox[2]], dim=(1, 2))
orig_masks_area = torch.sum(masks, dim=(1, 2))
union = bbox_area + orig_masks_area - masks_area
IoUs = masks_area / union
max_iou_index = torch.argmax(IoUs)
self.results[0].masks.data = torch.tensor(np.array([masks[max_iou_index].cpu().numpy()]))
return self.results
def point_prompt(self, points, pointlabel): # numpy 处理
masks = self._format_results(self.results[0], 0)
target_height = self.ori_img.shape[0]
target_width = self.ori_img.shape[1]
h = masks[0]['segmentation'].shape[0]
w = masks[0]['segmentation'].shape[1]
if h != target_height or w != target_width:
points = [[int(point[0] * w / target_width), int(point[1] * h / target_height)] for point in points]
onemask = np.zeros((h, w))
for i, annotation in enumerate(masks):
mask = annotation['segmentation'] if isinstance(annotation, dict) else annotation
for i, point in enumerate(points):
if mask[point[1], point[0]] == 1 and pointlabel[i] == 1:
onemask += mask
if mask[point[1], point[0]] == 1 and pointlabel[i] == 0:
onemask -= mask
onemask = onemask >= 1
return np.array([onemask])
if self.results[0].masks is not None:
if os.path.isdir(self.source):
raise ValueError(f"'{self.source}' is a directory, not a valid source for this function.")
masks = self._format_results(self.results[0], 0)
target_height, target_width = self.results[0].orig_shape
h = masks[0]['segmentation'].shape[0]
w = masks[0]['segmentation'].shape[1]
if h != target_height or w != target_width:
points = [[int(point[0] * w / target_width), int(point[1] * h / target_height)] for point in points]
onemask = np.zeros((h, w))
for i, annotation in enumerate(masks):
mask = annotation['segmentation'] if isinstance(annotation, dict) else annotation
for i, point in enumerate(points):
if mask[point[1], point[0]] == 1 and pointlabel[i] == 1:
onemask += mask
if mask[point[1], point[0]] == 1 and pointlabel[i] == 0:
onemask -= mask
onemask = onemask >= 1
self.results[0].masks.data = torch.tensor(np.array([onemask]))
return self.results
def text_prompt(self, text):
format_results = self._format_results(self.results[0], 0)
cropped_boxes, cropped_images, not_crop, filter_id, annotations = self._crop_image(format_results)
clip_model, preprocess = self.clip.load('ViT-B/32', device=self.device)
scores = self.retrieve(clip_model, preprocess, cropped_boxes, text, device=self.device)
max_idx = scores.argsort()
max_idx = max_idx[-1]
max_idx += sum(np.array(filter_id) <= int(max_idx))
return np.array([annotations[max_idx]['segmentation']])
if self.results[0].masks is not None:
format_results = self._format_results(self.results[0], 0)
cropped_boxes, cropped_images, not_crop, filter_id, annotations = self._crop_image(format_results)
clip_model, preprocess = self.clip.load('ViT-B/32', device=self.device)
scores = self.retrieve(clip_model, preprocess, cropped_boxes, text, device=self.device)
max_idx = scores.argsort()
max_idx = max_idx[-1]
max_idx += sum(np.array(filter_id) <= int(max_idx))
self.results[0].masks.data = torch.tensor(np.array([ann['segmentation'] for ann in annotations]))
return self.results
def everything_prompt(self):
return self.results[0].masks.data
return self.results

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