diff --git a/cmake/extract_includes.bat.in b/cmake/extract_includes.bat.in
index d9423f9382..9fd9de0dae 100644
--- a/cmake/extract_includes.bat.in
+++ b/cmake/extract_includes.bat.in
@@ -111,3 +111,15 @@ copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\wire_format.h" includ
 copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\wire_format_lite.h" include\google\protobuf\wire_format_lite.h
 copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\wire_format_lite_inl.h" include\google\protobuf\wire_format_lite_inl.h
 copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\wrappers.pb.h" include\google\protobuf\wrappers.pb.h
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\any.proto" include\google\protobuf\any.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\api.proto" include\google\protobuf\api.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\compiler\plugin.proto" include\google\protobuf\compiler\plugin.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\descriptor.proto" include\google\protobuf\descriptor.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\duration.proto" include\google\protobuf\duration.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\empty.proto" include\google\protobuf\empty.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\field_mask.proto" include\google\protobuf\field_mask.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\source_context.proto" include\google\protobuf\source_context.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\struct.proto" include\google\protobuf\struct.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\timestamp.proto" include\google\protobuf\timestamp.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\type.proto" include\google\protobuf\type.proto
+copy "${PROTOBUF_SOURCE_WIN32_PATH}\..\src\google\protobuf\wrappers.proto" include\google\protobuf\wrappers.proto
diff --git a/update_file_lists.sh b/update_file_lists.sh
index a064d65764..646c8ce344 100755
--- a/update_file_lists.sh
+++ b/update_file_lists.sh
@@ -128,15 +128,15 @@ set_cmake_value $CMAKE_DIR/tests.cmake lite_arena_test_files $CMAKE_PREFIX $LITE
 
 # Generate extract_includes.bat
 echo "mkdir include" > $EXTRACT_INCLUDES_BAT
-for HEADER in $PUBLIC_HEADERS; do
-  HEADER_DIR=$(dirname $HEADER)
-  while [ ! "$HEADER_DIR" = "." ]; do
-    echo $HEADER_DIR | sed "s/\\//\\\\/g"
-    HEADER_DIR=$(dirname $HEADER_DIR)
+for INCLUDE in $PUBLIC_HEADERS $WKT_PROTOS; do
+  INCLUDE_DIR=$(dirname "$INCLUDE")
+  while [ ! "$INCLUDE_DIR" = "." ]; do
+    echo "mkdir include\\${INCLUDE_DIR//\//\\}"
+    INCLUDE_DIR=$(dirname "$INCLUDE_DIR")
   done
-done | sort | uniq | sed "s/^/mkdir include\\\\/" >> $EXTRACT_INCLUDES_BAT
-for HEADER in $PUBLIC_HEADERS; do
-  WINPATH=$(echo $HEADER | sed 's;/;\\;g')
+done | sort | uniq >> $EXTRACT_INCLUDES_BAT
+for INCLUDE in $PUBLIC_HEADERS $WKT_PROTOS; do
+  WINPATH=${INCLUDE//\//\\}
   echo "copy \"\${PROTOBUF_SOURCE_WIN32_PATH}\\..\\src\\$WINPATH\" include\\$WINPATH" >> $EXTRACT_INCLUDES_BAT
 done