Merge pull request #8081 from mshabunin:fix-kmeans-compactness

modules/core/src/kmeans.cpp

@@ -165,11 +165,13 @@ public:
     KMeansDistanceComputer( double *_distances,
                             int *_labels,
                             const Mat& _data,
-                            const Mat& _centers )
+                            const Mat& _centers,
+                            bool _onlyDistance = false )
         : distances(_distances),
           labels(_labels),
           data(_data),
-          centers(_centers)
+          centers(_centers),
+          onlyDistance(_onlyDistance)
     {
     }
 
@@ -183,6 +185,12 @@ public:
         for( int i = begin; i<end; ++i)
         {
             const float *sample = data.ptr<float>(i);
+            if (onlyDistance)
+            {
+                const float* center = centers.ptr<float>(labels[i]);
+                distances[i] = normL2Sqr(sample, center, dims);
+                continue;
+            }
             int k_best = 0;
             double min_dist = DBL_MAX;
 
@@ -210,6 +218,7 @@ private:
     int *labels;
     const Mat& data;
     const Mat& centers;
+    bool onlyDistance;
 };
 
 }
@@ -259,6 +268,7 @@ double cv::kmeans( InputArray _data, int K,
     Mat centers(K, dims, type), old_centers(K, dims, type), temp(1, dims, type);
     std::vector<int> counters(K);
     std::vector<Vec2f> _box(dims);
+    Mat dists(1, N, CV_64F);
     Vec2f* box = &_box[0];
     double best_compactness = DBL_MAX, compactness = 0;
     RNG& rng = theRNG();
@@ -430,19 +440,16 @@ double cv::kmeans( InputArray _data, int K,
                 }
             }
 
-            if( ++iter == MAX(criteria.maxCount, 2) || max_center_shift <= criteria.epsilon )
+            bool isLastIter = (++iter == MAX(criteria.maxCount, 2) || max_center_shift <= criteria.epsilon);
-                break;
 
             // assign labels
-            Mat dists(1, N, CV_64F);
+            dists = 0;
             double* dist = dists.ptr<double>(0);
-            parallel_for_(Range(0, N),
+            parallel_for_(Range(0, N), KMeansDistanceComputer(dist, labels, data, centers, isLastIter));
-                         KMeansDistanceComputer(dist, labels, data, centers));
+            compactness = sum(dists)[0];
-            compactness = 0;
+
-            for( i = 0; i < N; i++ )
+            if (isLastIter)
-            {
+                break;
-                compactness += dist[i];
-            }
         }
 
         if( compactness < best_compactness )

modules/core/test/test_math.cpp

@@ -2748,21 +2748,23 @@ public:
 protected:
     void run(int inVariant)
     {
+        RNG& rng = ts->get_rng();
         int i, iter = 0, N = 0, N0 = 0, K = 0, dims = 0;
         Mat labels;
-        try
+
         {
-            RNG& rng = theRNG();
             const int MAX_DIM=5;
             int MAX_POINTS = 100, maxIter = 100;
             for( iter = 0; iter < maxIter; iter++ )
             {
                 ts->update_context(this, iter, true);
                 dims = rng.uniform(inVariant == MAT_1_N_CDIM ? 2 : 1, MAX_DIM+1);
-                N = rng.uniform(1, MAX_POINTS+1);
+                N = rng.uniform(2, MAX_POINTS+1);
                 N0 = rng.uniform(1, MAX(N/10, 2));
                 K = rng.uniform(1, N+1);
 
+                Mat centers;
+
                 if (inVariant == VECTOR)
                 {
                     dims = 2;
@@ -2775,7 +2777,7 @@ protected:
                         data[i] = data0[rng.uniform(0, N0)];
 
                     kmeans(data, K, labels, TermCriteria(TermCriteria::MAX_ITER+TermCriteria::EPS, 30, 0),
-                           5, KMEANS_PP_CENTERS);
+                           5, KMEANS_PP_CENTERS, centers);
                 }
                 else
                 {
@@ -2820,27 +2822,23 @@ protected:
                     }
 
                     kmeans(data, K, labels, TermCriteria(TermCriteria::MAX_ITER+TermCriteria::EPS, 30, 0),
-                           5, KMEANS_PP_CENTERS);
+                           5, KMEANS_PP_CENTERS, centers);
                 }
 
+                ASSERT_EQ(centers.rows, K);
+                ASSERT_EQ(labels.rows, N);
+
                 Mat hist(K, 1, CV_32S, Scalar(0));
                 for( i = 0; i < N; i++ )
                 {
                     int l = labels.at<int>(i);
-                    CV_Assert(0 <= l && l < K);
+                    ASSERT_GE(l, 0);
+                    ASSERT_LT(l, K);
                     hist.at<int>(l)++;
                 }
                 for( i = 0; i < K; i++ )
-                    CV_Assert( hist.at<int>(i) != 0 );
+                    ASSERT_GT(hist.at<int>(i), 0);
-            }
             }
-        catch(...)
-        {
-            ts->printf(cvtest::TS::LOG,
-                       "context: iteration=%d, N=%d, N0=%d, K=%d\n",
-                       iter, N, N0, K);
-            std::cout << labels << std::endl;
-            ts->set_failed_test_info(cvtest::TS::FAIL_MISMATCH);
         }
     }
 };
@@ -2859,6 +2857,35 @@ TEST_P(Core_KMeans_InputVariants, singular)
 
 INSTANTIATE_TEST_CASE_P(AllVariants, Core_KMeans_InputVariants, KMeansInputVariant::all());
 
+TEST(Core_KMeans, compactness)
+{
+    const int N = 1024;
+    const int attempts = 4;
+    const TermCriteria crit = TermCriteria(TermCriteria::COUNT, 5, 0); // low number of iterations
+    cvtest::TS& ts = *cvtest::TS::ptr();
+    for (int K = 1; K <= N; K *= 2)
+    {
+        Mat data(N, 1, CV_32FC2);
+        cvtest::randUni(ts.get_rng(), data, Scalar(-200, -200), Scalar(200, 200));
+        Mat labels, centers;
+        double compactness = kmeans(data, K, labels, crit, attempts, KMEANS_PP_CENTERS, centers);
+        centers = centers.reshape(2);
+        EXPECT_EQ(labels.rows, N);
+        EXPECT_EQ(centers.rows, K);
+        EXPECT_GE(compactness, 0.0);
+        double expected = 0.0;
+        for (int i = 0; i < N; ++i)
+        {
+            int l = labels.at<int>(i);
+            Point2f d = data.at<Point2f>(i) - centers.at<Point2f>(l);
+            expected += d.x * d.x + d.y * d.y;
+        }
+        EXPECT_NEAR(expected, compactness, expected * 1e-8);
+        if (K == N)
+            EXPECT_DOUBLE_EQ(compactness, 0.0);
+    }
+}
+
 TEST(CovariationMatrixVectorOfMat, accuracy)
 {
     unsigned int col_problem_size = 8, row_problem_size = 8, vector_size = 16;

samples/cpp/kmeans.cpp

@@ -53,7 +53,7 @@ int main( int /*argc*/, char** /*argv*/ )
 
         randShuffle(points, 1, &rng);
 
-        kmeans(points, clusterCount, labels,
+        double compactness = kmeans(points, clusterCount, labels,
             TermCriteria( TermCriteria::EPS+TermCriteria::COUNT, 10, 1.0),
                3, KMEANS_PP_CENTERS, centers);
 
@@ -65,6 +65,12 @@ int main( int /*argc*/, char** /*argv*/ )
             Point ipt = points.at<Point2f>(i);
             circle( img, ipt, 2, colorTab[clusterIdx], FILLED, LINE_AA );
         }
+        for (i = 0; i < centers.rows; ++i)
+        {
+            Point2f c = centers.at<Point2f>(i);
+            circle( img, c, 40, colorTab[i], 1, LINE_AA );
+        }
+        cout << "Compactness: " << compactness << endl;
 
         imshow("clusters", img);