diff --git a/doc/CMakeLists.txt b/doc/CMakeLists.txt
index 94dff9e762..8d7593e6bf 100644
--- a/doc/CMakeLists.txt
+++ b/doc/CMakeLists.txt
@@ -127,6 +127,7 @@ if(DOXYGEN_FOUND)
   string(REPLACE ";" " \\\n" CMAKE_DOXYGEN_IMAGE_PATH "${paths_doc} ; ${tutorial_path} ; ${tutorial_py_path} ; ${tutorial_js_path} ; ${paths_tutorial}")
   # TODO: remove paths_doc from EXAMPLE_PATH after face module tutorials/samples moved to separate folders
   string(REPLACE ";" " \\\n" CMAKE_DOXYGEN_EXAMPLE_PATH  "${example_path} ; ${paths_doc} ; ${paths_sample}")
+  string(REPLACE ";" " \\\n" CMAKE_DOXYGEN_INCLUDE_ROOTS "${paths_include}")
   set(CMAKE_DOXYGEN_LAYOUT "${CMAKE_CURRENT_BINARY_DIR}/DoxygenLayout.xml")
   set(CMAKE_DOXYGEN_OUTPUT_PATH "doxygen")
   set(CMAKE_DOXYGEN_MAIN_REFERENCE "${refs_main}")
diff --git a/doc/Doxyfile.in b/doc/Doxyfile.in
index 609a70cfc8..8386b14ff9 100644
--- a/doc/Doxyfile.in
+++ b/doc/Doxyfile.in
@@ -22,8 +22,8 @@ ABBREVIATE_BRIEF       = "The $name class" \
 ALWAYS_DETAILED_SEC    = NO
 INLINE_INHERITED_MEMB  = NO
 FULL_PATH_NAMES        = YES
-STRIP_FROM_PATH        = @CMAKE_SOURCE_DIR@/modules
-STRIP_FROM_INC_PATH    =
+STRIP_FROM_PATH        = @CMAKE_SOURCE_DIR@/modules @CMAKE_DOXYGEN_INCLUDE_ROOTS@
+STRIP_FROM_INC_PATH    = @CMAKE_DOXYGEN_INCLUDE_ROOTS@
 SHORT_NAMES            = NO
 JAVADOC_AUTOBRIEF      = NO
 QT_AUTOBRIEF           = NO
@@ -72,8 +72,8 @@ INTERNAL_DOCS          = NO
 CASE_SENSE_NAMES       = YES
 HIDE_SCOPE_NAMES       = NO
 SHOW_INCLUDE_FILES     = YES
-SHOW_GROUPED_MEMB_INC  = NO
-FORCE_LOCAL_INCLUDES   = YES
+SHOW_GROUPED_MEMB_INC  = YES
+FORCE_LOCAL_INCLUDES   = NO
 INLINE_INFO            = YES
 SORT_MEMBER_DOCS       = YES
 SORT_BRIEF_DOCS        = YES