connectedComponents: warning free version

modules/imgproc/include/opencv2/imgproc/imgproc.hpp

@@ -1091,6 +1091,11 @@ enum { TM_SQDIFF=0, TM_SQDIFF_NORMED=1, TM_CCORR=2, TM_CCORR_NORMED=3, TM_CCOEFF
 CV_EXPORTS_W void matchTemplate( InputArray image, InputArray templ,
                                  OutputArray result, int method );
 
+//! computes the connected components labeled image of boolean image I with 4 or 8 way connectivity - returns N, the total
+//number of labels [0, N-1] where 0 represents the background label.
+CV_EXPORTS_W uint64_t connectedComponents(Mat &L, const Mat &I, int connectivity = 8);
+
+
 //! mode of the contour retrieval algorithm
 enum
 {

modules/imgproc/src/connectedcomponents.cpp

@@ -0,0 +1,365 @@
+/*M///////////////////////////////////////////////////////////////////////////////////////
+//
+//  IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
+//
+//  By downloading, copying, installing or using the software you agree to this license.
+//  If you do not agree to this license, do not download, install,
+//  copy or use the software.
+//
+//
+//                        Intel License Agreement
+//                For Open Source Computer Vision Library
+//
+// Copyright (C) 2000, Intel Corporation, all rights reserved.
+// Third party copyrights are property of their respective owners.
+//
+// Redistribution and use in source and binary forms, with or without modification,
+// are permitted provided that the following conditions are met:
+//
+//   * Redistribution's of source code must retain the above copyright notice,
+//     this list of conditions and the following disclaimer.
+//
+//   * Redistribution's in binary form must reproduce the above copyright notice,
+//     this list of conditions and the following disclaimer in the documentation
+//     and/or other materials provided with the distribution.
+//
+//   * The name of Intel Corporation may not be used to endorse or promote products
+//     derived from this software without specific prior written permission.
+//
+// This software is provided by the copyright holders and contributors "as is" and
+// any express or implied warranties, including, but not limited to, the implied
+// warranties of merchantability and fitness for a particular purpose are disclaimed.
+// In no event shall the Intel Corporation or contributors be liable for any direct,
+// indirect, incidental, special, exemplary, or consequential damages
+// (including, but not limited to, procurement of substitute goods or services;
+// loss of use, data, or profits; or business interruption) however caused
+// and on any theory of liability, whether in contract, strict liability,
+// or tort (including negligence or otherwise) arising in any way out of
+// the use of this software, even if advised of the possibility of such damage.
+//
+// 2011 Jason Newton <nevion@gmail.com>
+//M*/
+//
+#include "precomp.hpp"
+
+namespace cv{
+    namespace connectedcomponents{
+    using std::vector;
+
+    //Find the root of the tree of node i
+    template<typename LabelT>
+    inline static
+    LabelT findRoot(const vector<LabelT> &P, LabelT i){
+        LabelT root = i;
+        while(P[root] < root){
+            root = P[root];
+        }
+        return root;
+    }
+
+    //Make all nodes in the path of node i point to root
+    template<typename LabelT>
+    inline static
+    void setRoot(vector<LabelT> &P, LabelT i, LabelT root){
+        while(P[i] < i){
+            LabelT j = P[i];
+            P[i] = root;
+            i = j;
+        }
+        P[i] = root;
+    }
+
+    //Find the root of the tree of the node i and compress the path in the process
+    template<typename LabelT>
+    inline static
+    LabelT find(vector<LabelT> &P, LabelT i){
+        LabelT root = findRoot(P, i);
+        setRoot(P, i, root);
+        return root;
+    }
+
+    //unite the two trees containing nodes i and j and return the new root
+    template<typename LabelT>
+    inline static
+    LabelT set_union(vector<LabelT> &P, LabelT i, LabelT j){
+        LabelT root = findRoot(P, i);
+        if(i != j){
+            LabelT rootj = findRoot(P, j);
+            if(root > rootj){
+                root = rootj;
+            }
+            setRoot(P, j, root);
+        }
+        setRoot(P, i, root);
+        return root;
+    }
+
+    //Flatten the Union Find tree and relabel the components
+    template<typename LabelT>
+    inline static
+    LabelT flattenL(vector<LabelT> &P){
+        LabelT k = 1;
+        for(size_t i = 1; i < P.size(); ++i){
+            if(P[i] < i){
+                P[i] = P[P[i]];
+            }else{
+                P[i] = k; k = k + 1;
+            }
+        }
+        return k;
+    }
+
+    ////Flatten the Union Find tree - inconsistent labels
+    //void flatten(int P[], int size){
+    //    for(int i = 1; i < size; ++i){
+    //        P[i] = P[P[i]];
+    //    }
+    //}
+    const int G4[2][2] = {{-1, 0}, {0, -1}};//b, d neighborhoods
+    const int G8[4][2] = {{-1, -1}, {-1, 0}, {-1, 1}, {0, -1}};//a, b, c, d neighborhoods
+    //Based on "Two Strategies to Speed up Connected Components Algorithms", the SAUF (Scan array union find) variant
+    //using decision trees
+    //Kesheng Wu, et al
+    template<typename LabelT, typename PixelT, int connectivity = 8>
+    struct LabelingImpl{
+    LabelT operator()(Mat &L, const Mat &I){
+        const int rows = L.rows;
+        const int cols = L.cols;
+        size_t nPixels = size_t(rows) * cols;
+        vector<LabelT> P; P.push_back(0);
+        LabelT l = 1;
+        //scanning phase
+        for(int r_i = 0; r_i < rows; ++r_i){
+            for(int c_i = 0; c_i < cols; ++c_i){
+                if(!I.at<PixelT>(r_i, c_i)){
+                    L.at<LabelT>(r_i, c_i) = 0;
+                    continue;
+                }
+                if(connectivity == 8){
+                    const int a = 0;
+                    const int b = 1;
+                    const int c = 2;
+                    const int d = 3;
+
+                    bool T[4];
+
+                    for(size_t i = 0; i < 4; ++i){
+                        int gr = r_i + G8[i][0];
+                        int gc = c_i + G8[i][1];
+                        T[i] = false;
+                        if(gr >= 0 && gr < rows && gc >= 0 && gc < cols){
+                            if(I.at<PixelT>(gr, gc)){
+                                T[i] = true;
+                            }
+                        }
+                    }
+
+                    //decision tree
+                    if(T[b]){
+                        //copy(b)
+                        L.at<LabelT>(r_i, c_i) = L.at<LabelT>(r_i + G8[b][0], c_i + G8[b][1]);
+                    }else{//not b
+                        if(T[c]){
+                            if(T[a]){
+                                //copy(c, a)
+                                L.at<LabelT>(r_i, c_i) = set_union(P, L.at<LabelT>(r_i + G8[c][0], c_i + G8[c][1]), L.at<LabelT>(r_i + G8[a][0], c_i + G8[a][1]));
+                            }else{
+                                if(T[d]){
+                                    //copy(c, d)
+                                    L.at<LabelT>(r_i, c_i) = set_union(P, L.at<LabelT>(r_i + G8[c][0], c_i + G8[c][1]), L.at<LabelT>(r_i + G8[d][0], c_i + G8[d][1]));
+                                }else{
+                                    //copy(c)
+                                    L.at<LabelT>(r_i, c_i) = L.at<LabelT>(r_i + G8[c][0], c_i + G8[c][1]);
+                                }
+                            }
+                        }else{//not c
+                            if(T[a]){
+                                //copy(a)
+                                L.at<LabelT>(r_i, c_i) = L.at<LabelT>(r_i + G8[a][0], c_i + G8[a][1]);
+                            }else{
+                                if(T[d]){
+                                    //copy(d)
+                                    L.at<LabelT>(r_i, c_i) = L.at<LabelT>(r_i + G8[d][0], c_i + G8[d][1]);
+                                }else{
+                                    //new label
+                                    L.at<LabelT>(r_i, c_i) = l;
+                                    P.push_back(l);//P[l] = l;
+                                    l = l + 1;
+                                }
+                            }
+                        }
+                    }
+                }else{
+                    //B & D only
+                    const int b = 0;
+                    const int d = 1;
+                    assert(connectivity == 4);
+                    bool T[2];
+                    for(size_t i = 0; i < 2; ++i){
+                        int gr = r_i + G4[i][0];
+                        int gc = c_i + G4[i][1];
+                        T[i] = false;
+                        if(gr >= 0 && gr < rows && gc >= 0 && gc < cols){
+                            if(I.at<PixelT>(gr, gc)){
+                                T[i] = true;
+                            }
+                        }
+                    }
+
+                    if(T[b]){
+                        if(T[d]){
+                            //copy(d, b)
+                            L.at<LabelT>(r_i, c_i) = set_union(P, L.at<LabelT>(r_i + G4[d][0], c_i + G4[d][1]), L.at<LabelT>(r_i + G4[b][0], c_i + G4[b][1]));
+                        }else{
+                            //copy(b)
+                            L.at<LabelT>(r_i, c_i) = L.at<LabelT>(r_i + G4[b][0], c_i + G4[b][1]);
+                        }
+                    }else{
+                        if(T[d]){
+                            //copy(d)
+                            L.at<LabelT>(r_i, c_i) = L.at<LabelT>(r_i + G4[d][0], c_i + G4[d][1]);
+                        }else{
+                            //new label
+                            L.at<LabelT>(r_i, c_i) = l;
+                            P.push_back(l);//P[l] = l;
+                            l = l + 1;
+                        }
+                    }
+
+                }
+            }
+        }
+
+        //analysis
+        LabelT nLabels = flattenL(P);
+
+        //assign final labels
+        for(size_t r = 0; r < rows; ++r){
+            for(size_t c = 0; c < cols; ++c){
+                L.at<LabelT>(r, c) = P[L.at<LabelT>(r, c)];
+            }
+        }
+
+        return nLabels;
+    }//End function LabelingImpl operator()
+
+    };//End struct LabelingImpl
+}//end namespace connectedcomponents
+
+//L's type must have an appropriate depth for the number of pixels in I
+uint64_t connectedComponents(Mat &L, const Mat &I, int connectivity){
+    CV_Assert(L.rows == I.rows);
+    CV_Assert(L.cols == I.cols);
+    CV_Assert(L.channels() == 1 && I.channels() == 1);
+    CV_Assert(connectivity == 8 || connectivity == 4);
+
+    int lDepth = L.depth();
+    int iDepth = I.depth();
+    using connectedcomponents::LabelingImpl;
+    //warn if L's depth is not sufficient?
+
+    if(lDepth == CV_8U){
+        if(iDepth == CV_8U || iDepth == CV_8S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint8_t, uint8_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint8_t, uint8_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_16U || iDepth == CV_16S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint8_t, uint16_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint8_t, uint16_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_32S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint8_t, int32_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint8_t, int32_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_32F){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint8_t, float, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint8_t, float, 8>()(L, I);
+            }
+        }else if(iDepth == CV_64F){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint8_t, double, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint8_t, double, 8>()(L, I);
+            }
+        }
+    }else if(lDepth == CV_16U){
+        if(iDepth == CV_8U || iDepth == CV_8S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint16_t, uint8_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint16_t, uint8_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_16U || iDepth == CV_16S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint16_t, uint16_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint16_t, uint16_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_32S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint16_t, int32_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint16_t, int32_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_32F){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint16_t, float, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint16_t, float, 8>()(L, I);
+            }
+        }else if(iDepth == CV_64F){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<uint16_t, double, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<uint16_t, double, 8>()(L, I);
+            }
+        }
+    }else if(lDepth == CV_32S){
+        if(iDepth == CV_8U || iDepth == CV_8S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<int32_t, uint8_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<int32_t, uint8_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_16U || iDepth == CV_16S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<int32_t, uint16_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<int32_t, uint16_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_32S){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<int32_t, int32_t, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<int32_t, int32_t, 8>()(L, I);
+            }
+        }else if(iDepth == CV_32F){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<int32_t, float, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<int32_t, float, 8>()(L, I);
+            }
+        }else if(iDepth == CV_64F){
+            if(connectivity == 4){
+                return (uint64_t) LabelingImpl<int32_t, double, 4>()(L, I);
+            }else{
+                return (uint64_t) LabelingImpl<int32_t, double, 8>()(L, I);
+            }
+        }
+    }
+
+    CV_Error(CV_StsUnsupportedFormat, "unsupported label/image type");
+    return -1;
+}
+
+
+}
+

samples/cpp/connected_components.cpp

@@ -11,23 +11,19 @@ int threshval = 100;
 static void on_trackbar(int, void*)
 {
     Mat bw = threshval < 128 ? (img < threshval) : (img > threshval);
-
+    Mat labelImage(img.size(), CV_32S);
-    vector<vector<Point> > contours;
+    int nLabels = connectedComponents(labelImage, bw, 8);
-    vector<Vec4i> hierarchy;
+    Vec3b colors[nLabels];
-
+    colors[0] = Vec3b(0, 0, 0);//background
-    findContours( bw, contours, hierarchy, CV_RETR_CCOMP, CV_CHAIN_APPROX_SIMPLE );
+    for(int label = 1; label < nLabels; ++label){
-
+        colors[label] = Vec3b( (rand()&255), (rand()&255), (rand()&255) );
-    Mat dst = Mat::zeros(img.size(), CV_8UC3);
+    }
-
+    Mat dst(img.size(), CV_8UC3);
-    if( !contours.empty() && !hierarchy.empty() )
+    for(int r = 0; r < dst.rows; ++r){
-    {
+        for(int c = 0; c < dst.cols; ++c){
-        // iterate through all the top-level contours,
+            int label = labelImage.at<int>(r, c);
-        // draw each connected component with its own random color
+            Vec3b &pixel = dst.at<Vec3b>(r, c);
-        int idx = 0;
+            pixel = colors[label];
-        for( ; idx >= 0; idx = hierarchy[idx][0] )
-        {
-            Scalar color( (rand()&255), (rand()&255), (rand()&255) );
-            drawContours( dst, contours, idx, color, CV_FILLED, 8, hierarchy );
          }
      }