dependencies/hdf5: Convert to a dependency_factory

Instead of a mega dependency that does everything, use a dependency
factory for config-tool and pkg-config
pull/7758/head
Dylan Baker 4 years ago
parent dff40ca259
commit b7cb30e175
  1. 2
      .github/workflows/ci_frameworks.yml
  2. 4
      docs/markdown/Dependencies.md
  3. 6
      docs/markdown/snippets/hdf5_dependnecy_improvements.md
  4. 4
      mesonbuild/dependencies/__init__.py
  5. 6
      mesonbuild/dependencies/base.py
  6. 235
      mesonbuild/dependencies/hdf5.py
  7. 8
      test cases/frameworks/25 hdf5/meson.build
  8. 6
      test cases/frameworks/25 hdf5/meson_options.txt
  9. 10
      test cases/frameworks/25 hdf5/test.json

@ -46,7 +46,7 @@ jobs:
python-version: '3.x'
- run: python -m pip install -e .
- run: brew install pkg-config ninja gcc hdf5
- run: meson setup "test cases/frameworks/25 hdf5" build
- run: meson setup "test cases/frameworks/25 hdf5" build -Dmethod=config-tool
- run: meson compile -C build
- uses: actions/upload-artifact@v1
if: failure()

@ -364,6 +364,10 @@ language-specific, you must specify the requested language using the
Meson uses pkg-config to find HDF5. The standard low-level HDF5 function and the `HL` high-level HDF5 functions are linked for each language.
`method` may be `auto`, `config-tool` or `pkg-config`.
*New in 0.56.0* the `config-tool` method.
*New in 0.56.0* the dependencies now return proper dependency types and `get_variable` and similar methods should work as expected.
## libwmf

@ -0,0 +1,6 @@
## HDF5 dependency improvements
HDF5 has been improved so that the internal representations have been split.
This allows selecting pkg-config and config-tool dependencies separately.
Both work as proper dependencies of their type, so `get_variable` and similar
now work correctly.

@ -14,7 +14,7 @@
from .boost import BoostDependency
from .cuda import CudaDependency
from .hdf5 import HDF5Dependency
from .hdf5 import hdf5_factory
from .base import ( # noqa: F401
Dependency, DependencyException, DependencyMethods, ExternalProgram, EmptyExternalProgram, NonExistingExternalProgram,
ExternalDependency, NotFoundDependency, ExternalLibrary, ExtraFrameworkDependency, InternalDependency,
@ -51,7 +51,7 @@ packages.update({
# per-file
'coarray': coarray_factory,
'hdf5': HDF5Dependency,
'hdf5': hdf5_factory,
'mpi': mpi_factory,
'scalapack': scalapack_factory,

@ -207,7 +207,7 @@ class Dependency:
"""
raise RuntimeError('Unreachable code in partial_dependency called')
def _add_sub_dependency(self, deplist: T.List['DependencyType']) -> bool:
def _add_sub_dependency(self, deplist: T.Iterable[T.Callable[[], 'Dependency']]) -> bool:
"""Add an internal depdency from a list of possible dependencies.
This method is intended to make it easier to add additional
@ -302,10 +302,10 @@ class InternalDependency(Dependency):
return new_dep
class HasNativeKwarg:
def __init__(self, kwargs):
def __init__(self, kwargs: T.Dict[str, T.Any]):
self.for_machine = self.get_for_machine_from_kwargs(kwargs)
def get_for_machine_from_kwargs(self, kwargs):
def get_for_machine_from_kwargs(self, kwargs: T.Dict[str, T.Any]) -> MachineChoice:
return MachineChoice.BUILD if kwargs.get('native', False) else MachineChoice.HOST
class ExternalDependency(Dependency, HasNativeKwarg):

@ -14,122 +14,149 @@
# This file contains the detection logic for miscellaneous external dependencies.
import functools
import subprocess
import shutil
import re
from pathlib import Path
from .. import mlog
from ..mesonlib import split_args, listify
from .base import (DependencyException, DependencyMethods, ExternalDependency, ExternalProgram,
PkgConfigDependency)
from ..mesonlib import OrderedSet
from .base import (
DependencyException, DependencyMethods, ConfigToolDependency,
PkgConfigDependency, factory_methods
)
import typing as T
if T.TYPE_CHECKING:
from .base import Dependency
from ..envconfig import MachineChoice
from ..environment import Environment
class HDF5Dependency(ExternalDependency):
def __init__(self, environment: 'Environment', kwargs: T.Dict[str, T.Any]) -> None:
language = kwargs.get('language', 'c')
super().__init__('hdf5', environment, kwargs, language=language)
kwargs['required'] = False
kwargs['silent'] = True
self.is_found = False
methods = listify(self.methods)
class HDF5PkgConfigDependency(PkgConfigDependency):
if language not in ('c', 'cpp', 'fortran'):
"""Handle brokenness in the HDF5 pkg-config files."""
def __init__(self, name: str, environment: 'Environment', kwargs: T.Dict[str, T.Any], language: T.Optional[str] = None) -> None:
language = language or 'c'
if language not in {'c', 'cpp', 'fortran'}:
raise DependencyException('Language {} is not supported with HDF5.'.format(language))
super().__init__(name, environment, kwargs, language)
if not self.is_found:
return
# some broken pkgconfig don't actually list the full path to the needed includes
newinc = [] # type: T.List[str]
for arg in self.compile_args:
if arg.startswith('-I'):
stem = 'static' if kwargs.get('static', False) else 'shared'
if (Path(arg[2:]) / stem).is_dir():
newinc.append('-I' + str(Path(arg[2:]) / stem))
self.compile_args += newinc
link_args = [] # type: T.List[str]
for larg in self.get_link_args():
lpath = Path(larg)
# some pkg-config hdf5.pc (e.g. Ubuntu) don't include the commonly-used HL HDF5 libraries,
# so let's add them if they exist
# additionally, some pkgconfig HDF5 HL files are malformed so let's be sure to find HL anyway
if lpath.is_file():
hl = []
if language == 'cpp':
hl += ['_hl_cpp', '_cpp']
elif language == 'fortran':
hl += ['_hl_fortran', 'hl_fortran', '_fortran']
hl += ['_hl'] # C HL library, always needed
suffix = '.' + lpath.name.split('.', 1)[1] # in case of .dll.a
for h in hl:
hlfn = lpath.parent / (lpath.name.split('.', 1)[0] + h + suffix)
if hlfn.is_file():
link_args.append(str(hlfn))
# HDF5 C libs are required by other HDF5 languages
link_args.append(larg)
else:
link_args.append(larg)
self.link_args = link_args
class HDF5ConfigToolDependency(ConfigToolDependency):
"""Wrapper around hdf5 binary config tools."""
version_arg = '-showconfig'
def __init__(self, name: str, environment: 'Environment', kwargs: T.Dict[str, T.Any], language: T.Optional[str] = None) -> None:
language = language or 'c'
if language not in {'c', 'cpp', 'fortran'}:
raise DependencyException('Language {} is not supported with HDF5.'.format(language))
if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
pkgconfig_files = ['hdf5', 'hdf5-serial']
PCEXE = shutil.which('pkg-config')
if PCEXE:
# some distros put hdf5-1.2.3.pc with version number in .pc filename.
ret = subprocess.run([PCEXE, '--list-all'], stdout=subprocess.PIPE, stderr=subprocess.DEVNULL,
universal_newlines=True)
if ret.returncode == 0:
for pkg in ret.stdout.split('\n'):
if pkg.startswith(('hdf5')):
pkgconfig_files.append(pkg.split(' ', 1)[0])
pkgconfig_files = list(set(pkgconfig_files)) # dedupe
for pkg in pkgconfig_files:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if not pkgdep.found():
continue
self.compile_args = pkgdep.get_compile_args()
# some broken pkgconfig don't actually list the full path to the needed includes
newinc = []
for arg in self.compile_args:
if arg.startswith('-I'):
stem = 'static' if kwargs.get('static', False) else 'shared'
if (Path(arg[2:]) / stem).is_dir():
newinc.append('-I' + str(Path(arg[2:]) / stem))
self.compile_args += newinc
# derive needed libraries by language
pd_link_args = pkgdep.get_link_args()
link_args = []
for larg in pd_link_args:
lpath = Path(larg)
# some pkg-config hdf5.pc (e.g. Ubuntu) don't include the commonly-used HL HDF5 libraries,
# so let's add them if they exist
# additionally, some pkgconfig HDF5 HL files are malformed so let's be sure to find HL anyway
if lpath.is_file():
hl = []
if language == 'cpp':
hl += ['_hl_cpp', '_cpp']
elif language == 'fortran':
hl += ['_hl_fortran', 'hl_fortran', '_fortran']
hl += ['_hl'] # C HL library, always needed
suffix = '.' + lpath.name.split('.', 1)[1] # in case of .dll.a
for h in hl:
hlfn = lpath.parent / (lpath.name.split('.', 1)[0] + h + suffix)
if hlfn.is_file():
link_args.append(str(hlfn))
# HDF5 C libs are required by other HDF5 languages
link_args.append(larg)
else:
link_args.append(larg)
self.link_args = link_args
self.version = pkgdep.get_version()
self.is_found = True
self.pcdep = pkgdep
return
if DependencyMethods.AUTO in methods:
wrappers = {'c': 'h5cc', 'cpp': 'h5c++', 'fortran': 'h5fc'}
comp_args = []
link_args = []
# have to always do C as well as desired language
for lang in set([language, 'c']):
prog = ExternalProgram(wrappers[lang], silent=True)
if not prog.found():
return
shlib_arg = '-noshlib' if kwargs.get('static', False) else '-shlib'
cmd = prog.get_command() + [shlib_arg, '-show']
p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True, timeout=15)
if p.returncode != 0:
mlog.debug('Command', mlog.bold(str(cmd)), 'failed to run:')
mlog.debug(mlog.bold('Standard output\n'), p.stdout)
mlog.debug(mlog.bold('Standard error\n'), p.stderr)
return
args = split_args(p.stdout)
for arg in args[1:]:
if arg.startswith(('-I', '-f', '-D')) or arg == '-pthread':
comp_args.append(arg)
elif arg.startswith(('-L', '-l', '-Wl')):
link_args.append(arg)
elif Path(arg).is_file():
link_args.append(arg)
self.compile_args = comp_args
self.link_args = link_args
self.is_found = True
if language == 'c':
tools = ['h5cc']
elif language == 'cpp':
tools = ['h5c++']
elif language == 'fortran':
tools = ['h5fc']
else:
raise DependencyException('How did you get here?')
# We need this before we call super()
for_machine = self.get_for_machine_from_kwargs(kwargs)
nkwargs = kwargs.copy()
nkwargs['tools'] = tools
super().__init__(name, environment, nkwargs, language)
if not self.is_found:
return
@staticmethod
def get_methods() -> T.List[DependencyMethods]:
return [DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]
args = self.get_config_value(['-show', '-noshlib' if kwargs.get('static', False) else '-shlib'], 'args')
for arg in args[1:]:
if arg.startswith(('-I', '-f', '-D')) or arg == '-pthread':
self.compile_args.append(arg)
elif arg.startswith(('-L', '-l', '-Wl')):
self.link_args.append(arg)
elif Path(arg).is_file():
self.link_args.append(arg)
# If the language is not C we need to add C as a subdependency
if language != 'c':
nkwargs = kwargs.copy()
nkwargs['language'] = 'c'
# I'm being too clever for mypy and pylint
self.is_found = self._add_sub_dependency(hdf5_factory(environment, self.for_machine, nkwargs)) # type: ignore # pylint: disable=no-value-for-parameter
def _sanitize_version(self, ver: str) -> str:
v = re.search(r'\s*HDF5 Version: (\d+\.\d+\.\d+)', ver)
return v.group(1)
@factory_methods({DependencyMethods.PKGCONFIG, DependencyMethods.CONFIG_TOOL})
def hdf5_factory(env: 'Environment', for_machine: 'MachineChoice',
kwargs: T.Dict[str, T.Any], methods: T.List[DependencyMethods]) -> T.List[T.Callable[[], 'Dependency']]:
language = kwargs.get('language')
candidates = [] # type: T.List[T.Callable[[], Dependency]]
if DependencyMethods.PKGCONFIG in methods:
# Use an ordered set so that these remain the first tried pkg-config files
pkgconfig_files = OrderedSet(['hdf5', 'hdf5-serial'])
# FIXME: This won't honor pkg-config paths, and cross-native files
PCEXE = shutil.which('pkg-config')
if PCEXE:
# some distros put hdf5-1.2.3.pc with version number in .pc filename.
ret = subprocess.run([PCEXE, '--list-all'], stdout=subprocess.PIPE, stderr=subprocess.DEVNULL,
universal_newlines=True)
if ret.returncode == 0:
for pkg in ret.stdout.split('\n'):
if pkg.startswith(('hdf5')):
pkgconfig_files.add(pkg.split(' ', 1)[0])
for pkg in pkgconfig_files:
candidates.append(functools.partial(HDF5PkgConfigDependency, pkg, env, kwargs, language))
if DependencyMethods.CONFIG_TOOL in methods:
candidates.append(functools.partial(HDF5ConfigToolDependency, 'hdf5', env, kwargs, language))
return candidates

@ -2,8 +2,10 @@ project('hdf5_framework', 'c')
# NOTE: all HDF5 languages must have HDF5 C library working.
method = get_option('method')
# --- C tests
h5c = dependency('hdf5', language : 'c', required : false)
h5c = dependency('hdf5', language : 'c', required : false, method : method)
if not h5c.found()
error('MESON_SKIP_TEST: HDF5 C library not found.')
endif
@ -12,14 +14,14 @@ test('HDF5 C', exec, timeout: 30)
# --- C++ tests
if add_languages('cpp', required: false)
h5cpp = dependency('hdf5', language : 'cpp', required : false, disabler: true)
h5cpp = dependency('hdf5', language : 'cpp', required : false, disabler: true, method : method)
execpp = executable('execpp', 'main.cpp', dependencies : h5cpp)
test('HDF5 C++', execpp, timeout: 30)
endif
# --- Fortran tests
if add_languages('fortran', required: false)
h5f = dependency('hdf5', language : 'fortran', required : false, disabler: true)
h5f = dependency('hdf5', language : 'fortran', required : false, disabler: true, method : method)
exef = executable('exef', 'main.f90', dependencies : h5f)
test('HDF5 Fortran', exef, timeout: 30)
endif

@ -0,0 +1,6 @@
option(
'method',
type : 'combo',
choices : ['pkg-config', 'config-tool'],
value : 'pkg-config'
)

@ -0,0 +1,10 @@
{
"matrix": {
"options": {
"method": [
{ "val": "pkg-config" },
{ "val": "config-tool" }
]
}
}
}
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