Merge pull request #6355 from scivision/depmethod

dependencies: refactor {coarray,mpi,hdf5,netcdf} to use dependency(.., methods: ...)
pull/6379/head
Jussi Pakkanen 5 years ago committed by GitHub
commit 7981308e6e
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GPG Key ID: 4AEE18F83AFDEB23
  1. 53
      mesonbuild/dependencies/coarrays.py
  2. 177
      mesonbuild/dependencies/hdf5.py
  3. 45
      mesonbuild/dependencies/misc.py
  4. 83
      mesonbuild/dependencies/mpi.py
  5. 8
      mesonbuild/dependencies/scalapack.py
  6. 2
      test cases/fortran/13 coarray/meson.build
  7. 4
      test cases/frameworks/25 hdf5/meson.build
  8. 37
      test cases/frameworks/26 netcdf/meson.build
  9. 3
      test cases/frameworks/30 scalapack/meson.build

@ -12,7 +12,8 @@
# See the License for the specific language governing permissions and
# limitations under the License.
from .base import CMakeDependency, ExternalDependency, PkgConfigDependency
from ..mesonlib import listify
from .base import CMakeDependency, DependencyMethods, ExternalDependency, PkgConfigDependency
class CoarrayDependency(ExternalDependency):
@ -29,33 +30,41 @@ class CoarrayDependency(ExternalDependency):
kwargs['required'] = False
kwargs['silent'] = True
self.is_found = False
methods = listify(self.methods)
cid = self.get_compiler().get_id()
if cid == 'gcc':
""" OpenCoarrays is the most commonly used method for Fortran Coarray with GCC """
# first try pkg-config
for pkg in ['caf-openmpi', 'caf']:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if pkgdep.found():
self.compile_args = pkgdep.get_compile_args()
self.link_args = pkgdep.get_link_args()
self.version = pkgdep.get_version()
if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
for pkg in ['caf-openmpi', 'caf']:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if pkgdep.found():
self.compile_args = pkgdep.get_compile_args()
self.link_args = pkgdep.get_link_args()
self.version = pkgdep.get_version()
self.is_found = True
self.pcdep = pkgdep
return
if set([DependencyMethods.AUTO, DependencyMethods.CMAKE]).intersection(methods):
if not kwargs.get('modules'):
kwargs['modules'] = 'OpenCoarrays::caf_mpi'
cmakedep = CMakeDependency('OpenCoarrays', environment, kwargs, language=self.language)
if cmakedep.found():
self.compile_args = cmakedep.get_compile_args()
self.link_args = cmakedep.get_link_args()
self.version = cmakedep.get_version()
self.is_found = True
self.pcdep = pkgdep
return
# second try CMake
kwargs['modules'] = 'OpenCoarrays::caf_mpi'
cmakedep = CMakeDependency('OpenCoarrays', environment, kwargs)
if cmakedep.found():
self.compile_args = cmakedep.get_compile_args()
self.link_args = cmakedep.get_link_args()
self.version = cmakedep.get_version()
if DependencyMethods.AUTO in methods:
# fallback to single image
self.compile_args = ['-fcoarray=single']
self.version = 'single image (fallback)'
self.is_found = True
return
# give up, just run as single image fallback
self.compile_args = ['-fcoarray=single']
self.version = 'single image'
self.is_found = True
elif cid == 'intel':
""" Coarrays are built into Intel compilers, no external library needed """
self.is_found = True
@ -68,3 +77,7 @@ class CoarrayDependency(ExternalDependency):
elif cid == 'nagfor':
""" NAG doesn't require any special arguments for Coarray """
self.is_found = True
@staticmethod
def get_methods():
return [DependencyMethods.AUTO, DependencyMethods.CMAKE, DependencyMethods.PKGCONFIG]

@ -15,11 +15,13 @@
# This file contains the detection logic for miscellaneous external dependencies.
import subprocess
import shutil
from pathlib import Path
from .. import mlog
from ..mesonlib import split_args
from .base import DependencyException, ExternalDependency, ExternalProgram, PkgConfigDependency
from ..mesonlib import split_args, listify
from .base import (DependencyException, DependencyMethods, ExternalDependency, ExternalProgram,
PkgConfigDependency)
class HDF5Dependency(ExternalDependency):
@ -29,95 +31,100 @@ class HDF5Dependency(ExternalDependency):
kwargs['required'] = False
kwargs['silent'] = True
self.is_found = False
methods = listify(self.methods)
# 1. pkg-config
pkgconfig_files = ['hdf5', 'hdf5-serial']
# some distros put hdf5-1.2.3.pc with version number in .pc filename.
try:
ret = subprocess.run(['pkg-config', '--list-all'], stdout=subprocess.PIPE, stderr=subprocess.DEVNULL,
universal_newlines=True)
if ret.returncode == 0:
for pkg in ret.stdout.split('\n'):
if pkg.startswith(('hdf5')):
pkgconfig_files.append(pkg.split(' ', 1)[0])
pkgconfig_files = list(set(pkgconfig_files)) # dedupe
except FileNotFoundError:
# pkg-config was not available
pass
if language not in ('c', 'cpp', 'fortran'):
raise DependencyException('Language {} is not supported with HDF5.'.format(language))
for pkg in pkgconfig_files:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if not pkgdep.found():
continue
self.compile_args = pkgdep.get_compile_args()
# some broken pkgconfig don't actually list the full path to the needed includes
newinc = []
for arg in self.compile_args:
if arg.startswith('-I'):
stem = 'static' if kwargs.get('static', False) else 'shared'
if (Path(arg[2:]) / stem).is_dir():
newinc.append('-I' + str(Path(arg[2:]) / stem))
self.compile_args += newinc
# derive needed libraries by language
pd_link_args = pkgdep.get_link_args()
link_args = []
for larg in pd_link_args:
lpath = Path(larg)
# some pkg-config hdf5.pc (e.g. Ubuntu) don't include the commonly-used HL HDF5 libraries,
# so let's add them if they exist
# additionally, some pkgconfig HDF5 HL files are malformed so let's be sure to find HL anyway
if lpath.is_file():
hl = []
if language == 'cpp':
hl += ['_hl_cpp', '_cpp']
elif language == 'fortran':
hl += ['_hl_fortran', 'hl_fortran', '_fortran']
hl += ['_hl'] # C HL library, always needed
suffix = '.' + lpath.name.split('.', 1)[1] # in case of .dll.a
for h in hl:
hlfn = lpath.parent / (lpath.name.split('.', 1)[0] + h + suffix)
if hlfn.is_file():
link_args.append(str(hlfn))
# HDF5 C libs are required by other HDF5 languages
link_args.append(larg)
else:
link_args.append(larg)
if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
PCEXE = shutil.which('pkg-config')
if PCEXE:
pkgconfig_files = ['hdf5', 'hdf5-serial']
# some distros put hdf5-1.2.3.pc with version number in .pc filename.
ret = subprocess.run([PCEXE, '--list-all'], stdout=subprocess.PIPE, stderr=subprocess.DEVNULL,
universal_newlines=True)
if ret.returncode == 0:
for pkg in ret.stdout.split('\n'):
if pkg.startswith(('hdf5')):
pkgconfig_files.append(pkg.split(' ', 1)[0])
pkgconfig_files = list(set(pkgconfig_files)) # dedupe
for pkg in pkgconfig_files:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if not pkgdep.found():
continue
self.compile_args = pkgdep.get_compile_args()
# some broken pkgconfig don't actually list the full path to the needed includes
newinc = []
for arg in self.compile_args:
if arg.startswith('-I'):
stem = 'static' if kwargs.get('static', False) else 'shared'
if (Path(arg[2:]) / stem).is_dir():
newinc.append('-I' + str(Path(arg[2:]) / stem))
self.compile_args += newinc
# derive needed libraries by language
pd_link_args = pkgdep.get_link_args()
link_args = []
for larg in pd_link_args:
lpath = Path(larg)
# some pkg-config hdf5.pc (e.g. Ubuntu) don't include the commonly-used HL HDF5 libraries,
# so let's add them if they exist
# additionally, some pkgconfig HDF5 HL files are malformed so let's be sure to find HL anyway
if lpath.is_file():
hl = []
if language == 'cpp':
hl += ['_hl_cpp', '_cpp']
elif language == 'fortran':
hl += ['_hl_fortran', 'hl_fortran', '_fortran']
hl += ['_hl'] # C HL library, always needed
suffix = '.' + lpath.name.split('.', 1)[1] # in case of .dll.a
for h in hl:
hlfn = lpath.parent / (lpath.name.split('.', 1)[0] + h + suffix)
if hlfn.is_file():
link_args.append(str(hlfn))
# HDF5 C libs are required by other HDF5 languages
link_args.append(larg)
else:
link_args.append(larg)
self.link_args = link_args
self.version = pkgdep.get_version()
self.is_found = True
self.pcdep = pkgdep
return
if DependencyMethods.AUTO in methods:
wrappers = {'c': 'h5cc', 'cpp': 'h5c++', 'fortran': 'h5fc'}
comp_args = []
link_args = []
# have to always do C as well as desired language
for lang in set([language, 'c']):
prog = ExternalProgram(wrappers[lang], silent=True)
if not prog.found():
return
cmd = prog.get_command() + ['-show']
p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True, timeout=15)
if p.returncode != 0:
mlog.debug('Command', mlog.bold(cmd), 'failed to run:')
mlog.debug(mlog.bold('Standard output\n'), p.stdout)
mlog.debug(mlog.bold('Standard error\n'), p.stderr)
return
args = split_args(p.stdout)
for arg in args[1:]:
if arg.startswith(('-I', '-f', '-D')) or arg == '-pthread':
comp_args.append(arg)
elif arg.startswith(('-L', '-l', '-Wl')):
link_args.append(arg)
elif Path(arg).is_file():
link_args.append(arg)
self.compile_args = comp_args
self.link_args = link_args
self.version = pkgdep.get_version()
self.is_found = True
self.pcdep = pkgdep
return
# 2. compiler wrapper fallback
wrappers = {'c': 'h5cc', 'cpp': 'h5c++', 'fortran': 'h5fc'}
comp_args = []
link_args = []
# have to always do C as well as desired language
for lang in set([language, 'c']):
prog = ExternalProgram(wrappers[lang], silent=True)
if not prog.found():
return
cmd = prog.get_command() + ['-show']
p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True, timeout=15)
if p.returncode != 0:
mlog.debug('Command', mlog.bold(cmd), 'failed to run:')
mlog.debug(mlog.bold('Standard output\n'), p.stdout)
mlog.debug(mlog.bold('Standard error\n'), p.stderr)
return
args = split_args(p.stdout)
for arg in args[1:]:
if arg.startswith(('-I', '-f', '-D')) or arg == '-pthread':
comp_args.append(arg)
elif arg.startswith(('-L', '-l', '-Wl')):
link_args.append(arg)
elif Path(arg).is_file():
link_args.append(arg)
self.compile_args = comp_args
self.link_args = link_args
self.is_found = True
@staticmethod
def get_methods():
return [DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]

@ -39,26 +39,41 @@ class NetCDFDependency(ExternalDependency):
kwargs['required'] = False
kwargs['silent'] = True
self.is_found = False
pkgconfig_files = ['netcdf']
methods = listify(self.methods)
if language not in ('c', 'cpp', 'fortran'):
raise DependencyException('Language {} is not supported with NetCDF.'.format(language))
if language == 'fortran':
pkgconfig_files.append('netcdf-fortran')
self.compile_args = []
self.link_args = []
self.pcdep = []
for pkg in pkgconfig_files:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if pkgdep.found():
self.compile_args.extend(pkgdep.get_compile_args())
self.link_args.extend(pkgdep.get_link_args())
self.version = pkgdep.get_version()
if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
pkgconfig_files = ['netcdf']
if language == 'fortran':
pkgconfig_files.append('netcdf-fortran')
self.compile_args = []
self.link_args = []
self.pcdep = []
for pkg in pkgconfig_files:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if pkgdep.found():
self.compile_args.extend(pkgdep.get_compile_args())
self.link_args.extend(pkgdep.get_link_args())
self.version = pkgdep.get_version()
self.is_found = True
self.pcdep.append(pkgdep)
if set([DependencyMethods.AUTO, DependencyMethods.CMAKE]).intersection(methods):
cmakedep = CMakeDependency('NetCDF', environment, kwargs, language=self.language)
if cmakedep.found():
self.compile_args = cmakedep.get_compile_args()
self.link_args = cmakedep.get_link_args()
self.version = cmakedep.get_version()
self.is_found = True
self.pcdep.append(pkgdep)
return
@staticmethod
def get_methods():
return [DependencyMethods.AUTO, DependencyMethods.PKGCONFIG, DependencyMethods.CMAKE]
class OpenMPDependency(ExternalDependency):

@ -19,9 +19,10 @@ import subprocess
from .. import mlog
from .. import mesonlib
from ..mesonlib import split_args
from ..mesonlib import split_args, listify
from ..environment import detect_cpu_family
from .base import DependencyException, ExternalDependency, ExternalProgram, PkgConfigDependency
from .base import (DependencyException, DependencyMethods, ExternalDependency, ExternalProgram,
PkgConfigDependency)
class MPIDependency(ExternalDependency):
@ -32,6 +33,8 @@ class MPIDependency(ExternalDependency):
kwargs['required'] = False
kwargs['silent'] = True
self.is_found = False
methods = listify(self.methods)
env_vars = []
default_wrappers = []
pkgconfig_files = []
@ -68,9 +71,8 @@ class MPIDependency(ExternalDependency):
else:
raise DependencyException('Language {} is not supported with MPI.'.format(language))
# 1. try pkg-config
for pkg in pkgconfig_files:
try:
if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
for pkg in pkgconfig_files:
pkgdep = PkgConfigDependency(pkg, environment, kwargs, language=self.language)
if pkgdep.found():
self.compile_args = pkgdep.get_compile_args()
@ -79,43 +81,42 @@ class MPIDependency(ExternalDependency):
self.is_found = True
self.pcdep = pkgdep
return
except Exception:
pass
# 2. Try environment variables
for var in env_vars:
if var in os.environ:
wrappers = [os.environ[var]]
break
else:
# Or search for default wrappers.
wrappers = default_wrappers
if DependencyMethods.AUTO in methods:
for var in env_vars:
if var in os.environ:
wrappers = [os.environ[var]]
break
else:
# Or search for default wrappers.
wrappers = default_wrappers
for prog in wrappers:
# Note: Some use OpenMPI with Intel compilers on Linux
result = self._try_openmpi_wrapper(prog, cid)
if result is not None:
self.is_found = True
self.version = result[0]
self.compile_args = self._filter_compile_args(result[1])
self.link_args = self._filter_link_args(result[2], cid)
break
result = self._try_other_wrapper(prog, cid)
if result is not None:
self.is_found = True
self.version = result[0]
self.compile_args = self._filter_compile_args(result[1])
self.link_args = self._filter_link_args(result[2], cid)
break
for prog in wrappers:
# Note: Some use OpenMPI with Intel compilers on Linux
result = self._try_openmpi_wrapper(prog, cid)
if result is not None:
self.is_found = True
self.version = result[0]
self.compile_args = self._filter_compile_args(result[1])
self.link_args = self._filter_link_args(result[2], cid)
break
result = self._try_other_wrapper(prog, cid)
if result is not None:
self.is_found = True
self.version = result[0]
self.compile_args = self._filter_compile_args(result[1])
self.link_args = self._filter_link_args(result[2], cid)
break
if not self.is_found and mesonlib.is_windows():
# only Intel Fortran compiler is compatible with Microsoft MPI at this time.
if language == 'fortran' and cid != 'intel-cl':
return
result = self._try_msmpi()
if result is not None:
self.is_found = True
self.version, self.compile_args, self.link_args = result
if not self.is_found and mesonlib.is_windows():
# only Intel Fortran compiler is compatible with Microsoft MPI at this time.
if language == 'fortran' and cid != 'intel-cl':
return
result = self._try_msmpi()
if result is not None:
self.is_found = True
self.version, self.compile_args, self.link_args = result
return
def _filter_compile_args(self, args: typing.Sequence[str]) -> typing.List[str]:
"""
@ -272,3 +273,7 @@ class MPIDependency(ExternalDependency):
return (None,
['-I' + incdir, '-I' + os.path.join(incdir, post)],
[os.path.join(libdir, 'msmpi.lib')])
@staticmethod
def get_methods():
return [DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]

@ -21,14 +21,14 @@ from .base import CMakeDependency, DependencyMethods, ExternalDependency, PkgCon
class ScalapackDependency(ExternalDependency):
def __init__(self, environment, kwargs: dict):
methods = mesonlib.listify(kwargs.get('method', 'auto'))
super().__init__('scalapack', environment, None, kwargs)
kwargs['required'] = False
kwargs['silent'] = True
self.is_found = False
self.static = kwargs.get('static', False)
methods = mesonlib.listify(self.methods)
if set(methods).intersection(['auto', 'pkg-config']):
if set([DependencyMethods.AUTO, DependencyMethods.PKGCONFIG]).intersection(methods):
pkgconfig_files = []
mklroot = None
is_gcc = self.clib_compiler.get_id() == 'gcc'
@ -106,8 +106,8 @@ class ScalapackDependency(ExternalDependency):
self.pcdep = pkgdep
return
if set(methods).intersection(['auto', 'cmake']):
cmakedep = CMakeDependency('Scalapack', environment, kwargs)
if set([DependencyMethods.AUTO, DependencyMethods.CMAKE]).intersection(methods):
cmakedep = CMakeDependency('Scalapack', environment, kwargs, language=self.language)
if cmakedep.found():
self.compile_args = cmakedep.get_compile_args()
self.link_args = cmakedep.get_link_args()

@ -15,7 +15,7 @@ coarray = dependency('coarray')
# this has to invoke a run of "sync all" to verify the MPI stack is functioning,
# particularly for dynamic linking
if fc.run('sync all; end', dependencies: coarray, name: 'Coarray link & run').returncode() != 0
error('The coarray stack (including MPI) did not link correctly so that a simple test could run.')
error('MESON_SKIP_TEST: coarray stack (including MPI) did not link correctly so that a simple test could run.')
endif
exe = executable('hello', 'main.f90',

@ -11,14 +11,14 @@ exec = executable('exec', 'main.c', dependencies : h5c)
test('HDF5 C', exec, timeout: 30)
# --- C++ tests
if add_languages('cpp')
if add_languages('cpp', required: false)
h5cpp = dependency('hdf5', language : 'cpp', required : false, disabler: true)
execpp = executable('execpp', 'main.cpp', dependencies : h5cpp)
test('HDF5 C++', execpp, timeout: 30)
endif
# --- Fortran tests
if add_languages('fortran')
if add_languages('fortran', required: false)
h5f = dependency('hdf5', language : 'fortran', required : false, disabler: true)
exef = executable('exef', 'main.f90', dependencies : h5f)
test('HDF5 Fortran', exef, timeout: 30)

@ -1,31 +1,32 @@
project('netcdf_test', 'c', 'cpp')
# --- C tests
nc_c = dependency('netcdf', language : 'c', required : false)
project('netcdf_test', 'c')
cc = meson.get_compiler('c')
c_code = '''#include <netcdf.h>
int main(void) { return 0; }'''
# --- C
nc_c = dependency('netcdf', language : 'c', required : false, disabler: true)
if not cc.links(c_code, dependencies: nc_c, name: 'NetCDF C')
nc_c = disabler()
endif
if not nc_c.found()
error('MESON_SKIP_TEST: NetCDF C library not found, skipping NetCDF framework tests.')
endif
exec = executable('exec', 'main.c', dependencies : nc_c)
test('NetCDF C', exec, timeout: 15)
test('NetCDF C', exec)
# --- C++ tests
nc_cpp = dependency('netcdf', language : 'cpp', required : false)
if nc_cpp.found()
# --- C++
if add_languages('cpp', required: false)
nc_cpp = dependency('netcdf', language : 'cpp', required : false, disabler: true)
execpp = executable('execpp', 'main.cpp', dependencies : nc_cpp)
test('NetCDF C++', execpp)
test('NetCDF C++', execpp, timeout: 15)
endif
# --- Fortran tests
# --- Fortran
if build_machine.system() != 'windows' and build_machine.system() != 'darwin'
add_languages('fortran')
nc_f = dependency('netcdf', language : 'fortran', required : false)
if nc_f.found()
if add_languages('fortran', required: false)
nc_f = dependency('netcdf', language : 'fortran', required : false, disabler: true)
exef = executable('exef', 'main.f90', dependencies : nc_f)
test('NetCDF Fortran', exef)
test('NetCDF Fortran', exef, timeout: 15)
endif
endif

@ -5,7 +5,6 @@ if not mpi_c.found()
error('MESON_SKIP_TEST: MPI library not available')
endif
scalapack = dependency('scalapack', required: false)
if not scalapack.found()
error('MESON_SKIP_TEST: scalapack library not available')
@ -15,7 +14,7 @@ c_exe = executable('scalapack_c', 'main.c',
dependencies: [scalapack, mpi_c])
test('scalapack_c', c_exe, timeout: 30)
if add_languages('fortran')
if add_languages('fortran', required: false)
mpi_f = dependency('mpi', language: 'fortran', required: false)
if not mpi_f.found()
error('MESON_SKIP_TEST: MPI Fortran library not available')

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